rs232707843 SNP Detail

Summary

• ID
  rs232707843
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55168646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTAGATG ATTGGGGTTG
  GGTCTCACTT TCCTCGACCT CAACATGAGG ATTTTAGGTT TCATGTCATG GTTTTAGTGT
  CAGGATAATA AGAGGATGTG TCTAGGGCTC AGCACCAAGT CTGGCACACT CAAGTGCACA
  GGAACAAGAC CAGCAATGCA TAAAGGGAAA TGGTTTCCAG GAGCACGGGG GGGGGGGGGG
  S
  GGGCAGGGCG GGGGGAGCAC TGGAGCAAGG ATGGGTGGGA GCACTGGAGC AAGGGTGGGA
  GCACTGGAGC AAGGGTGGGA GCACTGAGGC AAGGATGGGT ATGACACTGG CTAAAGATAC
  TCCTGGCCTT ATTAGTCTTC CCAAGTGTCC TAACGGTGGC CACCAATGGT TTCTTCTCAG
  TGCCTCCCAC TGTTCCAGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SM/J	ST/bJ	WSB/EiJ
ss391146734	MGP_WTSI_14_55550026	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	LP/J	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	SM/J	ST/bJ	WSB/EiJ
rs232707843					SNP	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391146734	MGP_WTSI_14_55550026	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55168646 () rs orientation: forward

Symbol	Name	Function Class
Il25	interleukin 25	1506 bp upstream
Rr389680	regulatory region 389680	291 bp downstream
Rr492369	regulatory region 492369	427 bp distal
Tssr125681	transcription start site region 125681	1855 bp upstream