rs232690019 SNP Detail

Summary

• ID
  rs232690019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86849425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTTATTT GATAACTTCA
  TGTTTATTAG AAGCAATTAG TTTTTTTATT TTATACTTGT ATAATTTATG TTAACTATCA
  GGGTTTTGTT GTTGTTATTG TTGTTTTGTT TTGTTATGGA GACAGGGTTT CTCTGTGTAG
  CCCTGACTGT CTTGGAACTC ACTCTGTAGA CCAGGCTGGC TTTGAACTCA CAGAGATCTG
  Y
  CTGGCTCTGC CTCCTAAGTG CTAGGATTAG AGGCATTCTC TATTACTGCC CAGCTGGGTA
  TTTTGTATGC ATATATATTT TCTTTTCTCT GAGCTCTGGC TAGCCTGCAA CAGGCTACAT
  AGATCAGGCT GGTCTCCAAC TCAAAGAGAT CTTACCTACT TCTATCTCTT TAGGGTTAGG
  ATTAAAGATG TGTTTTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321847609	CHEV_6_86822437	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232690019					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86849425 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aak1	AP2 associated kinase 1			Intron
				Noncoding-Transcript-Variant
Gm44152	predicted gene, 44152			1343 bp upstream
Rr633547	regulatory region 633547			1675 bp distal
Rr633548	regulatory region 633548			312 bp distal
Tssr57515	transcription start site region 57515			1630 bp downstream