rs232658440 SNP Detail

Summary

• ID
  rs232658440
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106909380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCTCCT CAGCTGTGGC
  AGCTGAGTCC CCAGGCCCTG TGCTGAGTCT TCTCCAATCC AGGGTCTGGC TTCTGGCTGG
  TGCTCAGTGG GTGTTTGCAG AGGAACACTG AAGGCTGCTG AGTCAGTCAG CCCTGGAACA
  GGCGCAGGAC GACTGTTCCC AGTGTTCAGG CAGGACCTTA GGTGTGGGGG GGGGGGGGGG
  S
  GGGTGGCCTT GGTGAATATC TGTTACTGCA GATCCATAGG AGACTAGTTC TTGTCAGTGG
  CAAGACTAGG AACTCCTGGG GACAGGGACT GTGGCTCCCA GCTTGAGTCT CCCAACCCCA
  GCACAGTACC TTGCTCACAG TACATAGTAC TAGAACAGTG TGAATGGCTA AGTTGCCAGG
  GATGTAGGGA GCCTCAGGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	SPRET/EiJ	SWR/J
ss362750635	MGP_WTSI_4_106724788	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	SPRET/EiJ	SWR/J
rs232658440					SNP	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362750635	MGP_WTSI_4_106724788	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106909380 () rs orientation: forward

Symbol	Name	Function Class
Rr596913	regulatory region 596913	496 bp proximal
Rr596914	regulatory region 596914	1200 bp proximal