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rs232634811 SNP Detail
Summary
  • ID
    rs232634811
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:34704825 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCGGCGGAG GAGGCAACGC
    CACGGCGGCG GCGACCGGCG GCAACCAGAA GAACAGCCCG GACCGCGTCA AGAGGCCCAT
    GAACGCCTTC ATGGTATGGT CCCGGGGGCA GCGGCGTAAG ATGGCCCAGG AGAACCCCAA
    GATGCACAAC TCGGAGATCA GCAAGCGCCT GGGCGCGGAG TGGAAACTTT TGTCCGAGAC
    S
    GAGAAGCGGC CGTTCATCGA CGAGGCCAAG CGGCTGCGCG CTCTGCACAT GAAGGAGCAC
    CCGGATTATA AATACCGGCC GCGGCGGAAA ACCAAGACGC TCATGAAGAA GGATAAGTAC
    ACGCTTCCCG GAGGCTTGCT GGCCCCCGGC GGGAACAGCA TGGCGAGCGG GGTTGGGGTG
    GGCGCCGGCC TGGGTGCGGG                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357517500 MGP_WTSI_3_34549598 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232634811 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357517500 MGP_WTSI_3_34549598 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:34704825 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13072 CpG island 13072 within coordinates
Gm64654 predicted gene, 64654 within coordinates
Gm64662 predicted gene, 64662 811 bp upstream
Gm64674 predicted gene, 64674 345 bp downstream
Rr370604 regulatory region 370604 444 bp downstream
Rr575166 regulatory region 575166 822 bp distal
Rr575168 regulatory region 575168 261 bp distal
Rr575169 regulatory region 575169 1775 bp proximal
Sox2 SRY (sex determining region Y)-box 2 Coding-Synonymous
Sox2ot SOX2 overlapping transcript (non-protein coding) within coordinates
Tssr28821 transcription start site region 28821 742 bp downstream
Tssr28822 transcription start site region 28822 671 bp downstream
Tssr28823 transcription start site region 28823 626 bp downstream
Tssr28824 transcription start site region 28824 487 bp downstream
Tssr28825 transcription start site region 28825 443 bp downstream
Tssr28826 transcription start site region 28826 90 bp upstream
Tssr28827 transcription start site region 28827 395 bp upstream
Tssr32976 transcription start site region 32976 1713 bp upstream
Tssr32977 transcription start site region 32977 941 bp upstream
Tssr32978 transcription start site region 32978 907 bp upstream
Tssr32979 transcription start site region 32979 801 bp upstream
Tssr32980 transcription start site region 32980 38 bp downstream
Tssr32981 transcription start site region 32981 360 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory