rs232591418 SNP Detail

Summary

• ID
  rs232591418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134999274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGT CATAGCCGAG TCACCACGCC
  Y
  GCATTAAAAA AATTCTCCCC TCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321351517	CHEV_4_134827878	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232591418					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134999274 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Cpgi15068	CpG island 15068	within coordinates
Rr398589	regulatory region 398589	927 bp upstream
Rr601974	regulatory region 601974	1609 bp distal
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	285 bp distal
Rr601977	regulatory region 601977	239 bp distal
Rr601978	regulatory region 601978	486 bp proximal
Rr601979	regulatory region 601979	829 bp proximal
Rr601980	regulatory region 601980	841 bp proximal
Rr601981	regulatory region 601981	1145 bp proximal
Tssr39607	transcription start site region 39607	210 bp upstream
Tssr43972	transcription start site region 43972	795 bp upstream
Tssr43973	transcription start site region 43973	743 bp downstream
Tssr43974	transcription start site region 43974	771 bp downstream
Tssr43975	transcription start site region 43975	791 bp downstream
Tssr43976	transcription start site region 43976	818 bp downstream
Tssr43977	transcription start site region 43977	835 bp downstream