rs232486558 SNP Detail

Summary

• ID
  rs232486558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTTCCA GAAAAATCCA
  TGTTATGAGT AAGGTTCAGC TGAAGTATTC CCTTAGAGTT CTAATAAAGT ATATGAATAA
  GACATTTCTA GAGCATATCT TACACAAATT GGGATGGAAG AATGGAGCTC AGGTTTATTT
  ATTTATTTAT TTATTTATTC ACTGATCGCA GCCACACACC CCTACAATTT TTTAAACACG
  Y
  GTGTGTATAG GATGTACATG TGACACAGCA CTGATATGGA CATCAGAGGA CAACCTGAAG
  AAGTTGTCTC TTCCCTGTGT GGATTCTGGA GATAGAGAGA GGTCTGCTGT TTGGTGTAGT
  GAGCGTCAAG GACCTTCCTG GACTAAGCCA TCTCTTAGTC CCATCAAATT TCACATGTAA
  CATTTTTTTT ACAGTAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323100055	CHEV_9_95309519	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232486558					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291153 () rs orientation: forward

Symbol	Name	Function Class
Chst2	carbohydrate sulfotransferase 2	1830 bp upstream
Gm8449	predicted gene 8449	1569 bp downstream
Gm35915	predicted gene, 35915	546 bp downstream
Gm37805	predicted gene, 37805	532 bp downstream
Rr684790	regulatory region 684790	1735 bp distal
Rr684791	regulatory region 684791	816 bp distal
Tssr86547	transcription start site region 86547	1661 bp downstream
Tssr90904	transcription start site region 90904	1981 bp upstream
Tssr90905	transcription start site region 90905	1909 bp upstream
Tssr90906	transcription start site region 90906	1888 bp upstream
Tssr90907	transcription start site region 90907	1861 bp upstream
Tssr90908	transcription start site region 90908	1824 bp upstream
Tssr90909	transcription start site region 90909	1801 bp upstream
Tssr90910	transcription start site region 90910	1767 bp upstream
Tssr90911	transcription start site region 90911	1739 bp upstream
Tssr90912	transcription start site region 90912	1321 bp upstream