rs232414666 SNP Detail

Summary

• ID
  rs232414666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:92759109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGAAGCG CTAAGAGAGC
  AAGCCGGTAA GGTGAAGGAT GGAAAGGAGC AAAGAGATGC CGAATTCGGC TGGGGGCGGG
  GAAGCTCCTG ATTGGCCAGC GGAGGACGTG ATGTCACGTC CGGCGAGGGA AGCCCTGCCT
  CAGCTGCCCC CCCCCCCCGC CCTGCCCCCG CCCCCACAGG TGGTGCCGCC GCCCTGGGTG
  Y
  TGGGCTGGGG GGGACACCTT AGGGGACCCC GGACTCGGCC TTTGCACTCC AGGCTCTCCC
  CGCCGCCTCC CATCTCACCC AGGCAACGGA GCACATCGCC TGGGCTGAGA GAACATTCCC
  TCCTCTCCCT CCGGAGAGCG AAGGGGCGCC CGGTGCGCCC CGATCGTGCC CCGCCTCGCC
  CCGCCCCGCC CCGCCCGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350507340	MGP_WTSI_1_94727964	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232414666					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350507340	MGP_WTSI_1_94727964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:92759109 () rs orientation: forward

Symbol	Name	Function Class
Gm29481	predicted gene 29481	within coordinates
Gm69848	predicted gene, 69848	within coordinates
Gpc1	glypican 1	258 bp upstream
Rr415863	regulatory region 415863	within coordinates
Rr415864	regulatory region 415864	1503 bp proximal
Tssr8123	transcription start site region 8123	12 bp downstream
Tssr8124	transcription start site region 8124	106 bp upstream
Tssr8125	transcription start site region 8125	227 bp upstream
Tssr8126	transcription start site region 8126	263 bp upstream
Tssr8127	transcription start site region 8127	343 bp upstream
Tssr8128	transcription start site region 8128	381 bp upstream
Tssr8129	transcription start site region 8129	405 bp upstream
Tssr8130	transcription start site region 8130	432 bp upstream