rs232403416 SNP Detail

Summary

• ID
  rs232403416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5531360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGAATG GTTATAGTTC
  TAGAGGTTAT ACATCTAAGA TCAAAACGGA GGCAAGGTTG GCCTCTGCTG GGGCTTCTCT
  AAGTTTCTCG AGTGGCGCCT TCCTGGAGCT TTTCTCACAT CTCCTGGTAG CTTCTCTCGG
  GGCATGCAAG CCCCTGGCAG CTTTTCTTCC CATAAGGACG GAAGTATTCA TAGCTTTGGA
  Y
  CCACTTTTAT GATCACATTT AGCCATAATT TGATCCTCGA AGTCCCTGTT TCTAAACTGT
  AATACGGGGG ATAGGACTTC AGCACATGAA TATGGAGGGA ACCCATTCAC TCCCTCATAG
  TTTGTCACAG TTTGAAGGGT TTCCCTGTTG TCATTCAGCT TACTGGTTCT TTTTTTTTTT
  TTTTTTTTTT TTGATCAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321451368	CHEV_5_5481360	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232403416					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5531360 () rs orientation: forward

Symbol	Name	Function Class
Gm30325	predicted gene, 30325	within coordinates
Rr607007	regulatory region 607007	385 bp proximal
Rr607008	regulatory region 607008	400 bp proximal
Rr607009	regulatory region 607009	457 bp proximal
Rr607010	regulatory region 607010	1960 bp proximal
Tssr45090	transcription start site region 45090	191 bp upstream