rs232391463 SNP Detail

Summary

• ID
  rs232391463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151823855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTTGTGC ACCAATCCCC
  AGCTGTGGGT TTCGCGAGAA AACTCATCTG TCTTAGTTTT GTCTGGGTGG ACTTTGTTTG
  CATCCCAGGA TCCAAAGGCC TAAGGTTGTT CTCAGTGATC ATGGTCCCAC CCTGTCTAGT
  CATTGTGTCC ACTTTCAAGC CAAGCCAGAG TGAAGAAAGT CTCTTGGAAA ACCACCACTC
  R
  CTCTCACAGT TCTGACACCT GTTATCATCT GGTCAGGAGG CCCAGTACTT TTCTCTGGTC
  CTTAACCTTG ACACAAGCCA GGCATAGCCA TCTGTCTCAT GGCATCCTCT TGGGAAAGTT
  TCCACCCAGC CTTCCCACTT ACTCCCACGC AATCACACAA TCACATTTAT TATATTTTTA
  TTTATTTAGT ATTTATGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028123	CHEV_3_151781182	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232391463					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151823855 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587459	regulatory region 587459			1475 bp distal
Rr587460	regulatory region 587460			1888 bp proximal
Tssr1098	transcription start site region 1098			1878 bp downstream