rs232376745 SNP Detail

Summary

• ID
  rs232376745
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGACTTCA TTAAATGTCT
  TCCAGATTCA AGGTTACTAA ATCCTAACCT AGGAACGTGT GATCTCAAGA AACACACAAT
  GGAGGCATTT AAGCAGAATC AATTTTGTGC AATATATTTG ATTTTGAAAT AGACCATGAC
  CTTTGAAGGT AATATTTTTA ACATTTTATG GATTATTATT ACTATTATTA TTATTAAAAA
  W
  TTTTAAACTT AAGAGATTTG TTTTAGCACA TCTCTGGTCC AAATATTCTG AAATGTAAAT
  AGGAATCTTT GAAATTATGT TTTTATAAGT GTTATGTGGT TCAAACTCTC CATTGTTGCC
  TCTCCTCATC TTATTACATT GGAGAATTGG CCCCAAATTT GTGCAGACAG CTGGGAAGAG
  CCAGATAACA CACTCTGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss357588005	MGP_WTSI_3_37537304	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs232376745					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357588005	MGP_WTSI_3_37537304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692531 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	1299 bp proximal
Gm42922	predicted gene 42922	1723 bp downstream
Rr575523	regulatory region 575523	1075 bp proximal
Rr575524	regulatory region 575524	1709 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1565 bp upstream
Tssr28908	transcription start site region 28908	1282 bp upstream
Tssr28909	transcription start site region 28909	1523 bp upstream
Tssr28910	transcription start site region 28910	1546 bp upstream
Tssr28911	transcription start site region 28911	1563 bp upstream
Tssr28912	transcription start site region 28912	1603 bp upstream