rs232335845 SNP Detail

Summary

• ID
  rs232335845
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149240426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG ACCACGTCCA CCCTAGCAGT
  R
  GGAGGGAACC CAGTCTCTAA GATGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321425105	CHEV_4_148530078	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232335845					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149240426 () rs orientation: forward

Symbol	Name	Function Class
Pgd	phosphogluconate dehydrogenase	Intron
Rr377402	regulatory region 377402	840 bp upstream
Rr604846	regulatory region 604846	917 bp distal
Rr604847	regulatory region 604847	525 bp distal
Rr604848	regulatory region 604848	within coordinates
Rr604849	regulatory region 604849	1508 bp proximal
Tssr44628	transcription start site region 44628	1985 bp upstream
Tssr44629	transcription start site region 44629	1738 bp upstream