rs232313930 SNP Detail

Summary

• ID
  rs232313930
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152098417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAGAAA AGGGACAGTT
  GGTAACTAGG TTCTCTGACC TTTGTTCTAC AGGCAGATCC AGCAAACCCT TTGTAGCACT
  GTAAATACTT TGGCTTCGAT AATGTTCTTA TTACTCTAAC CAATCATAAC TGGCTAAGCT
  TTTTCATTTC TCCAAAAAGC TAATTTAATT GTATATTTTG ACATGAATTT GCATAGTAAT
  R
  AACCTATGTT AAATCCGAGA GTGGTGGTCA GCACATTGTT AATTTCCTAA CGCTCAGGAA
  ACATCAGGTG GGTGGGTGTT ACTGCTTTTG CACTGCAGCA TATAAAACTG CATATTACAA
  TTTACAAAAT GTCTTTTTTG AATGTAACGG GATGTATTCA TTTTTAGTGG AATTTGTTAC
  CAGATATCAG TAAATTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028810	CHEV_3_152055744	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232313930					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152098417 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	1787 bp proximal
Gm43857	predicted gene 43857	within coordinates
Gm66519	predicted gene, 66519	within coordinates
Rr587540	regulatory region 587540	946 bp proximal
Rr587541	regulatory region 587541	1033 bp proximal
Rr587542	regulatory region 587542	1887 bp proximal
Usp33	ubiquitin specific peptidase 33	mRNA-UTR