rs232311482 SNP Detail

Summary

• ID
  rs232311482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145799830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCAACAA CTTTTATGTT
  GCCCTGTCCT ATGTTGAGAC ACTGTTCTTG ATGAAAGCAT GATGTGACAA AGCAAGCTGT
  ATTCTTTAGA ACTAAATTGG ATTCTTCCTT TTTTTTTTCA AATACACTAC AGTAAAATGT
  ATTTGTGACA TTTAAAGTAG CAACTTCTTT TAATAGTATA TTTTTAAGTC TAACTGGAGA
  R
  TGCAGCCTCT TTAGATAAAG AAGAAGCTTT GAGGCCAGCA GAAGGGTCTG GGACGTTTCT
  TGGACATGCA GGCTGCCTTT GTGCTGTTCT CGCCGAGCTG GGGTAATATT TCCCACCTGA
  GGATTTGCAC AGTGACCTGG CTAGCAGCCT GTGTTACACA CATCTCTCTG CCTCAAGGGA
  AGCCAGCCTG TGCCTTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320539036	CHEV_2_145783646	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232311482					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145799830 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr397368	regulatory region 397368	142 bp downstream
Rr566613	regulatory region 566613	871 bp distal
Rr566614	regulatory region 566614	within coordinates
Rr566615	regulatory region 566615	266 bp distal
Rr566616	regulatory region 566616	132 bp proximal