rs232283834 SNP Detail

Summary

• ID
  rs232283834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102388023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTCAGG CCAATCTACT
  TCAATTGATC CAACTGTTTG AGGACTATTA GAAACTAAAA TACTGGCTTT TTCAAGCCCA
  CTCTCCCTTC TCATTACTTC AAAAGATTTC ACTAAAGGTG CCCAGTGACC ACCCCTCCCC
  CTTGACCATG AGATCCCTCT TCCAGAGTTA AAAATAAAAC CATGGAATGT CTTAGGTGTC
  Y
  TAGTACTTGG CACCTGAGCT TAGATTGTGG CTGGGAGCTT CGTTCTCATA TTTCCAACAT
  ATCCTTGTCT TACCTGAGTT TAAAGGAAGA TGTAGCTGTC AGCAAAGTAT CTGTGTTCAG
  GTCTTCTTGG CCTGGCTTTC TGCCACTAGG GTGTGTACGG TTCTTTTCCA AATGGTGCCT
  AGAATCTCTT CTGGGAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320438844	CHEV_2_102397835	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232283834					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102388023 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1260 bp proximal