rs232267685 SNP Detail

Summary

• ID
  rs232267685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102380656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCGCTGCC CTGTTCTCGC
  CTAGGCATCC CTCCAGTCAC TCCCCTCCAG TCACTCGGTA CCGACACAGC AACGGGAAAC
  GATGGAGCTA GACAGATGGG CGCAGTTGGG GCTGGTGTTC CTGCAGCTCC TTCTCATCTC
  ATCGTTGCCA AGAGGTACTG TTAGTGACCA GGAGCCCTTT GCGGGGTCTG ATGGGGAGCT
  R
  GACAGGTTGG GGTTGTTCCA GCGATAATCT GGGGTTTCTG GCTGGGAGCT GGATGCTCCC
  GTTGTCCGCT TTAAGAACAG GATGATATTC CTAATTGTGG GACTAAACTA TGTCTAAGCT
  AAAGAAGAGA GCTCTTGTGC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC
  TATCTATCTA TCTATCTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320438753	CHEV_2_102390468	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232267685					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102380656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11977	CpG island 11977			48 bp distal
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561703	regulatory region 561703			289 bp distal
Rr561704	regulatory region 561704			592 bp proximal
Tssr19094	transcription start site region 19094			231 bp downstream
Tssr19095	transcription start site region 19095			198 bp downstream
Tssr19096	transcription start site region 19096			183 bp downstream
Tssr19097	transcription start site region 19097			143 bp downstream