rs232260591 SNP Detail

Summary

• ID
  rs232260591
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95291941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACACAACC ATTCCACAAA
  GAATACATCA GCCCTGTCAT TGTGGATTAA GGCATGAAAG CTAAATGTGA TATGGACAGA
  TGTAAACATT ATTACATGCA CATTTCCCTA CATGCATATG TTATTACAGA AACACATTTA
  TATTAATTGG AGGCAGATGT GTAATATTCA CATTAAAAAC TAACATTATG GAAATATATG
  W
  TTTATATACA TATATATATA TATATGAAAA TATATGGAAA GGATAACTTT TTTGTTTTGT
  TTTAAGCTGA GGTAAAGGCA AATTGATCCT TCAAAAAAAA ACTTATAAAA TAATCTAGCC
  AGCAAAACTT AATTGTGTAA TTGAATAAGT TATTGTCATT ACAGGATTTA AGATTATTCT
  TGTAACTATT TCAGAAGTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
ss378552001	MGP_WTSI_9_95310307	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ZALENDE/EiJ
rs232260591					SNP	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378552001	MGP_WTSI_9_95310307	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95291941 () rs orientation: forward

Symbol	Name	Function Class
Gm8449	predicted gene 8449	781 bp downstream
Gm35915	predicted gene, 35915	1334 bp downstream
Gm37805	predicted gene, 37805	1320 bp downstream
Rr684791	regulatory region 684791	1604 bp distal