rs232216418 SNP Detail

Summary

• ID
  rs232216418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:103628547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGTGGGGT GGGTGGTGCA
  ATCCCAGCTT CTAGAATTCC TTCTGTATGG AGAGCATGCA AACTCACCCT AAAAGGTCTG
  AGAAAAGGCA ACTTGCCACA TAATAATTAT ACAATAACCT AGGCATGGAG AATGAACATC
  CTTCATGGCT TTTTGATCTC CTTAATTACC CCAGTCATGT TAAAAACCCG TCTTCTCCTA
  Y
  CCTGAGATAG ATAAGTACGC CCTATCAGGA ATTACTTATC TTTACCCGAT TTGTTTAAGA
  TTTTACCCAA AACTTTAAAG ACTATGCAAG ATGCCGGGAG GGGGTGCGAG GGGGGCACTT
  TTTTGTCCAG GAGAATTATT TGGGGGGCGG GGGGGTGGTC AAAGAGGGTG GATAACGAGT
  AAAAGGAAAA AATGAGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355100004	MGP_WTSI_2_103638359	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232216418					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355100004	MGP_WTSI_2_103638359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103628547 () rs orientation: forward

Symbol	Name	Function Class
Caprin1	cell cycle associated protein 1	601 bp upstream
Gm75184	predicted gene, 75184	within coordinates
Rr373619	regulatory region 373619	within coordinates
Rr561932	regulatory region 561932	842 bp distal
Rr561933	regulatory region 561933	564 bp distal
Rr561934	regulatory region 561934	63 bp distal
Tssr586	transcription start site region 586	628 bp upstream
Tssr25500	transcription start site region 25500	1224 bp upstream
Tssr25501	transcription start site region 25501	1114 bp upstream
Tssr25502	transcription start site region 25502	590 bp upstream
Tssr25503	transcription start site region 25503	540 bp upstream