rs232211950 SNP Detail

Summary

• ID
  rs232211950
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116241283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCGCCC CTCGCGAGCT
  GATTGGAGGG CGTCGGCAGC GCTGATCGGC GATTGGTGAG CGGTGTCACA AAGGGCGGGA
  CCGGAGCTTC GCGGGCCAGC GTAGGCCGGC GTCTCGGGCG CGCGAACTCC TATCCGCCTG
  CGGGCAGGCG AGCGAGCGAG CGGGCGGACG CGACCACCGG AGGGCGAGCG GGTGAGGGGC
  G
  CGGCGGGGCG GGGCGCGGCG CGGCCCGGAG GGAGGGCGGG TGGTGGAAGG GCCTGCTGCG
  TCTTCGCTGC CCCGGTGCGC CCGCCTCAGC TGCAGCCTGG TCACACCCGT GCTTCTCTGC
  CTACGGACTC ACGGACAAAT TGGTCGTACC CGTGGCTCGG GGTGCTGCTG ACCCGACTTT
  GGGTCTGAGT GTGGTCCCTG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss369769090	MGP_WTSI_6_116214340	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs232211950					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369769090	MGP_WTSI_6_116214340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116241283 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17882	CpG island 17882			within coordinates
Gm44103	predicted gene, 44103			227 bp upstream
Gm67200	predicted gene, 67200			269 bp upstream
Rr399855	regulatory region 399855			16 bp downstream
Rr637176	regulatory region 637176			280 bp distal
Rr637177	regulatory region 637177			47 bp distal
Rr637178	regulatory region 637178			within coordinates
Rr637179	regulatory region 637179			1277 bp proximal
Rr637180	regulatory region 637180			1723 bp proximal
Tssr58359	transcription start site region 58359			97 bp downstream
Tssr58360	transcription start site region 58360			56 bp downstream
Tssr58361	transcription start site region 58361			40 bp downstream
Tssr62562	transcription start site region 62562			265 bp upstream
Washc2	WASH complex subunit 2			1651 bp downstream
Zfand4	zinc finger, AN1-type domain 4			Intron
				mRNA-UTR