rs232209763 SNP Detail

Summary

• ID
  rs232209763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144921652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGAGGT CCTCCGCCTT
  GACCGCCGCC CCCCTACCTG TCGCTGTAGC TGTAGCTACC GCTGTCGCTG TCGCTGCCGC
  CCAAGCCCGG TTCTGCGAGG TGCTTCCTCT CCGCCACTCC TCAATGGCGG TGACTAGAGC
  GCTAGACTCG ACCAATCGAG TGGCTACGTA CCTGGGCCTG GCCAGCAGAG CACCGAGCCG
  Y
  CGATGGGGCG CCCCCTAGCG TCCGCAGCCG TTCCTGTAAG GGCGGCGGGT GCCTCCCAGT
  ATGCTGGGGG CTTAATGAGC AACAGCTCAA TCAGCCCCGT TTTACAAATG GGTAAACTGA
  GAGCCGGGAC AGTGTAGGAA TATAAATCAT CCTAGTTCAA ACATTATCGT GCCTCCAAAA
  CCGCCCTGCT TTCCATCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321412791	CHEV_4_144784985	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232209763					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144921652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15267	CpG island 15267	within coordinates
Rr398672	regulatory region 398672	within coordinates
Rr604318	regulatory region 604318	1865 bp distal
Rr604319	regulatory region 604319	88 bp distal
Rr604320	regulatory region 604320	713 bp distal
Rr604321	regulatory region 604321	within coordinates
Rr604322	regulatory region 604322	5 bp proximal
Rr604323	regulatory region 604323	1613 bp proximal
Tssr44481	transcription start site region 44481	118 bp upstream
Tssr44482	transcription start site region 44482	89 bp upstream
Tssr44483	transcription start site region 44483	38 bp upstream
Vps13d	vacuolar protein sorting 13D	77 bp upstream