rs232206610 SNP Detail

Summary

• ID
  rs232206610
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151811202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCATCCCC CTGAGCCAAG
  GAATTCTTCT AAAATACACA ACTGACAGTG TTGCTGCCCC CACAGTTACC ACAGAGCCTT
  CCACGCCCTC ACTCATCTCT TCCTCCAGCC TCCTCGCCAC CCAGCCGCAC TCGCTGCAGC
  AGCTCCCTAG GCTCTCAGGC TGCGTGCACC CCCTAGTGGC ACTCGCTGCA CCGCTTCCCC
  G
  GTCTCCCAAG CCGCGTGCAC CTTCCCCAAG CCAGTGGCTG TTTCATAATG CACCTCCCAC
  TTGTGCCGAC TCTGCCGCTT CTAGAGGGAA CTGCTGGCTG CTTTCTTGTC TTCCCTTGTC
  CCTGACAGCC TCTTCATCGT GACACTGTGT GTCCCGAACT GTTCATCAGT TCCTAATGGC
  TTCTGTCTTT CTTTAAGAGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028040	CHEV_3_151768529	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232206610					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151811202 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			within coordinates
Rr587452	regulatory region 587452			within coordinates
Rr587453	regulatory region 587453			17 bp distal
Rr587454	regulatory region 587454			28 bp proximal
Tssr36159	transcription start site region 36159			1632 bp downstream