rs232160706 SNP Detail

Summary

• ID
  rs232160706
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67510903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTGTTAAT AAGCAGGCAA AGGCTGCGTC
  CATCTCCCAC TCCTGTTCAG ATCTGAAGGC GGTTAGTTTT AGCAACTTCC TTCAAAGGAA
  CAGCAACCTC AAAGTTTACA TTTTTCCCTC TACCCACTGC TGAGGATGGG ACCGAGGGCC
  R
  GGTCAGATGC GAGGCAAGCA CACTAGCCCA GTCTCTAGGA AACACCAGAG TATCAACAGT
  AAATGTTAGG ATTTCACAAG GAAGGAAGCA TTAGAATTTA AAATATAAAA TTCAAGCATT
  AGACAAAGGA GAACAATAAA ATGATATAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812323	CHEV_6_67483913	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232160706					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67510903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17511	CpG island 17511	511 bp distal
Cpgi17512	CpG island 17512	731 bp proximal
Gm42889	predicted gene 42889	within coordinates
Gm67034	predicted gene, 67034	613 bp upstream
Rr368087	regulatory region 368087	546 bp downstream
Rr631664	regulatory region 631664	1852 bp distal
Rr631666	regulatory region 631666	624 bp distal
Rr631667	regulatory region 631667	123 bp distal
Rr631668	regulatory region 631668	872 bp proximal
Rr631669	regulatory region 631669	1315 bp proximal
Rr631670	regulatory region 631670	1866 bp proximal
Rr631671	regulatory region 631671	1867 bp proximal
Tacstd2	tumor-associated calcium signal transducer 2	143 bp downstream
Tssr1867	transcription start site region 1867	1378 bp upstream
Tssr1868	transcription start site region 1868	1342 bp upstream
Tssr1869	transcription start site region 1869	581 bp upstream
Tssr1870	transcription start site region 1870	450 bp downstream
Tssr1871	transcription start site region 1871	101 bp downstream
Tssr1872	transcription start site region 1872	853 bp downstream
Tssr61254	transcription start site region 61254	256 bp upstream
Tssr61255	transcription start site region 61255	811 bp downstream
Tssr61256	transcription start site region 61256	1275 bp downstream
Tssr61257	transcription start site region 61257	1766 bp downstream
Tssr61258	transcription start site region 61258	1864 bp downstream
Tssr61259	transcription start site region 61259	1909 bp downstream