rs232109457 SNP Detail

Summary

• ID
  rs232109457
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148251395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGTTCCT ATCCCTCTCT
  GGAGCAGTTT GGCAGTGACG CCACCAGGTC TGGATAGCAT TCTCTTGGGC TTAGAGATGA
  AGGCTGTGGA GTGGCGCGCG CACACACACA CACACACACA CACACGCACA CACACGCACA
  CGCGCACGCG CACACGCGCG CGCGCACACA CACACGCGCG CGCGCACACA CACACGCGCG
  T
  ACACACACAC AGAGAAGAAT AATCTTGGCT ACTCTTTTTA TTCATCCCTG CTTTATGCTA
  GCCTTCCTGG CTGGGCCAGG ATTGGTTTTA TCTACAAGCT GCCTTTCTGT GCCATGCTTG
  GGGTAGGCCG TGGGGAGGGT GTGTTAGGCT GTAGGTTAGG CTACTTGCTT TCTGGCATCT
  CAGCTCCTTC CCAGAATGCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	ZALENDE/EiJ
ss363609388	MGP_WTSI_4_147541047	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	LP/J	MOLF/EiJ	ZALENDE/EiJ
rs232109457					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363609388	MGP_WTSI_4_147541047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148251395 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15296	CpG island 15296	1854 bp distal
Cpgi15297	CpG island 15297	within coordinates
Fbxo2	F-box protein 2	514 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	309 bp proximal
Rr604612	regulatory region 604612	1282 bp proximal
Rr604613	regulatory region 604613	1314 bp proximal
Rr604614	regulatory region 604614	1539 bp proximal
Tssr44601	transcription start site region 44601	565 bp upstream