rs232106878 SNP Detail

Summary

• ID
  rs232106878
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67514165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTTGAAC AACTAGCTTA TCCTGTCCAG
  CTTCCACCCA CCTTGCCTCA GAGAAAGATC TAAAGCACAA ATGTGTGCAC ATCTTCTTTT
  TTGTTGAGAA TActctctct ctctctctct ctctctctct ctctctctct ctctctctct
  S
  tctGTGTGTG TGTGTGTATG TACAGGTAAG GAGACATCTT GGCTCTAAGA ACAGAGTTCA
  TATTTTATGA ACTGGTGCAC AGTGCCAACT GCTGTCATAG TTACTGCCAT CATCATTGTA
  TCCCTGCAAA CTTCTCAGAC GTCCACCAGC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321812349	CHEV_6_67487175	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232106878					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67514165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	1305 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631669	regulatory region 631669	1926 bp distal
Rr631670	regulatory region 631670	1375 bp distal
Rr631671	regulatory region 631671	1105 bp distal
Rr631672	regulatory region 631672	1202 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	1385 bp upstream
Tssr61256	transcription start site region 61256	1955 bp upstream
Tssr61257	transcription start site region 61257	1484 bp upstream
Tssr61258	transcription start site region 61258	1379 bp upstream
Tssr61259	transcription start site region 61259	1311 bp upstream