rs232064197 SNP Detail

Summary

• ID
  rs232064197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37260028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGATCAC ATGACCGACT
  TGGTTCTTAG AGGACAAGGT TTGGAAACTT TGATGTATAG GTCTAAAGCC TCAGTAGGAG
  GGAAGTTGGG TGGTGTCTGT CTCACCTGGT GCAGTGGCAG TGAGGCTGTA ACAACTGCCC
  AGTCACTAGC CTGAAGCAGA TGTTGTATTT AGTGCTAAGG TCACCTGTAG TTTATATGTA
  R
  CTCTTCTTGT TCACATGAAA CATAGAAATC TACTTGACAG CCCCAAACGT CACTGCCACT
  ATTGTGTTTC CTAAGGAATA CAGCTGGAAG CTCATCTGTT CTTGAGCCAA GTCTTTCCCA
  GAACACATGG GTGGGTCTGA CTGCAGAGAA ATGGAGAAGA TGGCAGAAAT ATGAAGATCA
  GAAAGACTGT CCAAAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
ss357578802	MGP_WTSI_3_37104801	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ
rs232064197					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357578802	MGP_WTSI_3_37104801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37260028 () rs orientation: forward

Symbol	Name	Function Class
Gm64461	predicted gene, 64461	within coordinates
Gm64469	predicted gene, 64469	1091 bp upstream
Rr367425	regulatory region 367425	1412 bp downstream
Rr367426	regulatory region 367426	362 bp downstream
Rr397645	regulatory region 397645	1601 bp downstream
Rr575433	regulatory region 575433	1102 bp distal
Rr575434	regulatory region 575434	1755 bp distal
Rr575435	regulatory region 575435	941 bp distal
Rr575436	regulatory region 575436	131 bp distal