rs232053665 SNP Detail

Summary

• ID
  rs232053665
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145575130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGAGAC AGCTCAGTGT
  TTAAGAGCAT TTGCTGATTT TGCAAAGGAC CTGGGTTCGA TTCCCAGTAT CCACACAGCT
  CTGGCTCCAA GGGATATGGT GCTCTATTCT GACCTTTGTG GACACCAGAG ATTGCCATGG
  GGCAATTACG CAAAATAAAG CTAAAGAAAA ATATTTAGCT GAATAAAGTT TGAAGGTTGA
  A
  AAAAAAAAAG TATATCAAGG CCAAAAGTTA TTCCCCCACA AAGACTGCTC AACGTTTCTG
  TAGTCTGTGC AGGTGAATGT AAGGAACTAA GAGTTGCTGG AGTGATGAGA AACAGGCATT
  TGATCACCCT GACAGAACAG GCAGATAACT GGTCCCCAGG GCCACCACAC TAACTGTGTC
  CTGAACAGTG TTCACTTAGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J
ss363599770	MGP_WTSI_4_145438463	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	RIIIS/J
rs232053665					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363599770	MGP_WTSI_4_145438463	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145575130 () rs orientation: forward

Symbol	Name	Function Class
Rr604403	regulatory region 604403	414 bp distal