rs232052272 SNP Detail

Summary

• ID
  rs232052272
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:42561957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGTGAG AGCAAGCTCC
  TGCAACTCCA AGCATCCCCT TTCCTGACAT GATGCACTTT ATTTTCTGAA ATCATGAACA
  GAAATAGACT TCTCCTCCTT CGAGTCACTT CTGTTAGATA CTTGGTCACA ACAATGAGAG
  GAATAAATGG TACTCTTTGA ATCATTTATC ATCCTGGCCA ACATTTCCAT CAGACGTAAG
  M
  TATTTTATGT TTAACTGTCC TCACACGCTG GAACCCAGGT CATAGGAGCA AAAGAAAGAC
  ATGGACACAG GAGCACATAT TCAGGAGAAG GTTCTCTGTG AGAGAGGACG GGTGCCACAC
  TTCTCAAGCA GCAGGCAGGG GAGTTCTTGA AGAAAGGGAC AATATTTTAC TTGTCAGTAA
  AAGAAACACA AATCAACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368091132	MGP_WTSI_6_42535022	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232052272					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368091132	MGP_WTSI_6_42535022	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:42561957 () rs orientation: forward

Symbol	Name	Function Class
Gm38798	predicted gene, 38798	1470 bp upstream
Rr629347	regulatory region 629347	1216 bp distal
Rr629348	regulatory region 629348	1315 bp distal
Tssr56046	transcription start site region 56046	194 bp upstream
Tssr56047	transcription start site region 56047	327 bp upstream
Tssr56048	transcription start site region 56048	937 bp upstream
Tssr56049	transcription start site region 56049	987 bp upstream
Tssr60620	transcription start site region 60620	717 bp downstream
Tssr60621	transcription start site region 60621	735 bp downstream
Tssr60622	transcription start site region 60622	781 bp downstream
Tssr60623	transcription start site region 60623	837 bp downstream
Tssr60624	transcription start site region 60624	879 bp downstream
Tssr60625	transcription start site region 60625	947 bp downstream
Tssr60626	transcription start site region 60626	962 bp downstream
Tssr60627	transcription start site region 60627	978 bp downstream
Tssr60628	transcription start site region 60628	1122 bp downstream
Tssr60629	transcription start site region 60629	1177 bp downstream
Tssr60630	transcription start site region 60630	1246 bp downstream
Tssr60631	transcription start site region 60631	1290 bp downstream
Tssr60632	transcription start site region 60632	1342 bp downstream
Tssr60633	transcription start site region 60633	1368 bp downstream
Tssr60634	transcription start site region 60634	1381 bp downstream
Tssr60635	transcription start site region 60635	1447 bp downstream
Tssr60636	transcription start site region 60636	1552 bp downstream
Tssr60637	transcription start site region 60637	1808 bp downstream
Tssr60638	transcription start site region 60638	1848 bp downstream
Tssr60639	transcription start site region 60639	1899 bp downstream