rs232026266 SNP Detail

Summary

• ID
  rs232026266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:53338334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCTCTCTC CCCCCTCCCC CCTCCCTCCT CCCCTCTCCT
  CCTCTCTTCT CTCCTCCCTC CTCCCTTCCC TTCCCTTCCC TTCTCTTCTC CTCCCCTCCC
  Y
  TCCCTTCTCC TCCCCTCTCT TTCCCAAAAT GGAAAGGGTT CAGTGAAAAG AGCCCCTTCC
  TACATTAAAA AAATAAAAAG AAAGAAAAGA AAAAGTCGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321117460	CHEV_4_53351206	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232026266					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:53338334 () rs orientation: forward

Symbol	Name	Function Class
Rr376485	regulatory region 376485	104 bp upstream
Rr592236	regulatory region 592236	143 bp distal
Rr592237	regulatory region 592237	881 bp proximal
Rr592238	regulatory region 592238	1375 bp proximal
Tssr37294	transcription start site region 37294	1783 bp upstream
Tssr41768	transcription start site region 41768	1483 bp downstream