rs232021213 SNP Detail

Summary

• ID
  rs232021213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114871557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGACCGA GTCGCTGTCC
  TCCACTCCTT TGGTTATAAT AAGAAACACC TTTCCAGTGT TCAGAGTCAG ATCTTAGAAC
  CAGGAGGCTG AGCTCAGCCA AACAATACCT GTCTAGTCAG CCAGGTCAGT GTGGCCATGC
  AGGGTCCAGC CCTGGGCAGG CCTTGGTTGC AGAGCTACAT CGAGGCTGTG GAGAACCACC
  Y
  GTGTAGCCTT CAGCTAACAA TAGGGGAAGG TCAGAGGCAG GGCCACAGGG GAAGTGACAG
  ACTGACACAG GAAACATTTA AAGACAGCTT CAAGCAGATC TCCGAGATCA AGAGAAGCTC
  TGAGCATGAC CTAGTCCCAC AGAGCACAGC TGGCACGTGA GGCACAGAGA GTGTCCACAG
  TTTTACGCAG TTTCAAGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369741187	MGP_WTSI_6_114844614	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	C	T	T	T	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232021213					SNP	T	T	T	T	C	T	T	T	T	T	C	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	C	C	T	T	T	T	T	C	T	T	T	T	T	C	C	T	T	C	T	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369741187	MGP_WTSI_6_114844614	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114871557 () rs orientation: forward

Symbol	Name	Function Class
Rr368149	regulatory region 368149	654 bp downstream
Rr636858	regulatory region 636858	1584 bp distal
Rr636859	regulatory region 636859	within coordinates
Rr636860	regulatory region 636860	372 bp proximal
Rr636861	regulatory region 636861	469 bp proximal
Rr636862	regulatory region 636862	1784 bp proximal
Vgll4	vestigial like family member 4	Intron