rs232002345 SNP Detail

Summary

• ID
  rs232002345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59260153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCTGATAA AGACACAGGG AGGGAGAAGG TACCTGCATA
  TGTTTCCTCT TTTTTTCTTT TCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT
  Y
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTGGGGGA
  GGCAGGGGGG TTGAGACAGG GTTTCTCTGT ATAGCCCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321140391	CHEV_4_59273025	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232002345					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59260153 () rs orientation: forward

Symbol	Name	Function Class
Gm12596	predicted gene 12596	within coordinates
Gm68876	predicted gene, 68876	234 bp upstream
Gm68878	predicted gene, 68878	349 bp downstream
Rr367634	regulatory region 367634	1241 bp upstream
Rr398285	regulatory region 398285	802 bp upstream
Rr593020	regulatory region 593020	92 bp distal
Rr593021	regulatory region 593021	139 bp distal
Rr593022	regulatory region 593022	875 bp proximal
Tssr37421	transcription start site region 37421	100 bp downstream