rs231977206 SNP Detail

Summary

• ID
  rs231977206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:29692594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCTGTCT AACACTATGA
  CCATTTAGCA GAATAATAGC ACTAGGATTT TTTAAATTTT CTTTTCTCCT TCTCCTTCTC
  CTTCTCCTTC TCCTTCTCCT TCTCCTTCTC CTTCTCCTTC TCCTTCTCCT TCTGGTTTGA
  TAGGATCTCA TTGTGTGCCC CTGGCTGATT TAGAACTCAA ATGTAGACCA GGTTTACCTC
  R
  AACTCCCAGA GATTCATCTG CCCCTTCCTC CTAAGTGCTG CCATTAAACT TTCTCCAGCC
  TCTTTCCAAC TCTCTCTGAA AACAGCGATC TTACCCCATT TCCTTCTCTA AAACTCTTAT
  TTCCAAATCA ATTCAACACA AACTCAGTAA TCTGATCTCA AGTCCTTCTA CAGCCTCCAT
  TCAGTTGAAC ACATACTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss367818873	MGP_WTSI_6_29642595	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs231977206					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	A	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367818873	MGP_WTSI_6_29642595	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:29692594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17240	CpG island 17240	1238 bp proximal
Rr627610	regulatory region 627610	1197 bp proximal
Rr627611	regulatory region 627611	1682 bp proximal
Tspan33	tetraspanin 33	1627 bp upstream
Tssr1798	transcription start site region 1798	1656 bp upstream
Tssr55283	transcription start site region 55283	1587 bp upstream
Tssr55284	transcription start site region 55284	1609 bp upstream
Tssr55285	transcription start site region 55285	1660 bp upstream