rs231949554 SNP Detail

Summary

• ID
  rs231949554
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83807775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGATAT AAAGCCAAGA
  AAATGACAAC ATGAGAACAA TGCAATTTTG GATATGGATA GATATCTTAT TCTTTCTCCC
  TTTCTGCCTA AAGTACTAGA CGTATTCCAA TACTCAATGT CCTCTGGCTT CCAAAATAAA
  ACCCCTATTG TCTAATACTC CTCAACTTCT AAAATCTCAG TTAAAACTAT GAGTGATAAG
  S
  TAATTTATTC GCAGTAAACG TCTGGCATAT TTTTATTTGG GTTTGAGACA GTGTGGAAGG
  CCATCTAGAA ACATATGGTT AGAACCACCA CAGGAAGCCA AACACTGCCA TACTATGAGG
  TATAAACAAA TAAATTCTCT GTAAAGATAA TGCTGAAGGT CGCCTCTGGG CTGTTGTAAT
  TCTCTCAGAG GCTGTGTGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369040064	MGP_WTSI_6_83780787	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231949554					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369040064	MGP_WTSI_6_83780787	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83807775 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17619	CpG island 17619	409 bp proximal
Gm68055	predicted gene, 68055	480 bp upstream
Paip2b	poly(A) binding protein interacting protein 2B	Intron
Rr399726	regulatory region 399726	927 bp upstream
Rr632951	regulatory region 632951	43 bp proximal
Rr632952	regulatory region 632952	491 bp proximal
Rr632953	regulatory region 632953	630 bp proximal
Rr632954	regulatory region 632954	938 bp proximal
Rr632955	regulatory region 632955	958 bp proximal
Tssr61712	transcription start site region 61712	890 bp downstream
Tssr61713	transcription start site region 61713	912 bp downstream
Tssr61714	transcription start site region 61714	943 bp downstream