rs231778439 SNP Detail

Summary

• ID
  rs231778439
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79792613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGGTGG AACACCCTTG
  GCCATGAAAT ATGTTCTCCT TACGTGCCTC AGCCTTTCAA AGTTCTGTGC ATTAGAGTCA
  GGAATTCCAT TCTTCCTGGA GCTAAGCGTG GGGCCAGCTG TGTAAGTAAA GTTTTGTTTT
  TCTTCTTAAA CAACTTTTTC CCTCTATTTA AAAATGTGAA GAAAAAGGCA AAAAAAACAA
  M
  AACAAAAAAA AAAACAACAA AAAAAAACCC ACCAAAAAAC CTAGATATTC TTTTCTTTCA
  TTTTTGCTCT CTTTAGTGGA AAGAAAAGGA ATAAAAAGTT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAACTCACCC TTTTCAAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
ss358593255	MGP_WTSI_3_79689228	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ
rs231778439					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593255	MGP_WTSI_3_79689228	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79792613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	751 bp proximal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	within coordinates
Rr375225	regulatory region 375225	1774 bp downstream
Rr375226	regulatory region 375226	169 bp upstream
Rr578602	regulatory region 578602	1825 bp distal
Rr578604	regulatory region 578604	1748 bp distal
Rr578605	regulatory region 578605	47 bp distal
Rr578606	regulatory region 578606	528 bp proximal
Rr578607	regulatory region 578607	1048 bp proximal
Rr578608	regulatory region 578608	1497 bp proximal
Rr578609	regulatory region 578609	1546 bp proximal
Rr578610	regulatory region 578610	1586 bp proximal
Tssr29596	transcription start site region 29596	735 bp downstream
Tssr29597	transcription start site region 29597	714 bp downstream
Tssr29598	transcription start site region 29598	216 bp downstream
Tssr29599	transcription start site region 29599	187 bp downstream
Tssr29600	transcription start site region 29600	138 bp downstream
Tssr29601	transcription start site region 29601	109 bp downstream
Tssr29602	transcription start site region 29602	643 bp upstream
Tssr29603	transcription start site region 29603	734 bp upstream
Tssr29604	transcription start site region 29604	806 bp upstream
Tssr29605	transcription start site region 29605	875 bp upstream
Tssr29606	transcription start site region 29606	908 bp upstream
Tssr29607	transcription start site region 29607	1578 bp upstream
Tssr29608	transcription start site region 29608	1596 bp upstream
Tssr33752	transcription start site region 33752	857 bp downstream
Tssr33753	transcription start site region 33753	875 bp downstream
Tssr33754	transcription start site region 33754	1490 bp downstream