rs231771259 SNP Detail

Summary

• ID
  rs231771259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100762181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAAAAT CACCCTTAAA
  TTATTAAATG CTGTGCTCCA CGGACCTGAA TATCAATATG AACACGGGTA TAGCAGCAAG
  AAACAGCTAT GTATATTGAA GGGCCCAAAG TAATTCGTAA GGGTTGGAGC ATAGAGATGG
  GGAGCGCAAA TCCATGTAAA CTCTTGAATT TACATATGTG TGAATCTTTT AAACACTTAG
  R
  AGTGGCATAC ATTCCCTACT TTCTATGGTC TAATCAATAT TTTTATATTT AAATCAAATT
  CTTTTTCAAG GTAAAATCAA GGTATTTGAA GGCGCAGACA TTTTTAACTG ATAAAAGGAA
  AAGTTTTAAT TTCATGATAG CCCTGTTTCT GGGTCTATGC CAGGAAGTCG GCTGCAGTAG
  ACCAAGGTGG CCCCAAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320849821	CHEV_3_100658788	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231771259					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100762181 () rs orientation: forward

Symbol	Name	Function Class
Rr581917	regulatory region 581917	1494 bp proximal
Vtcn1	V-set domain containing T cell activation inhibitor 1	Intron