rs231727560 SNP Detail

Summary

• ID
  rs231727560
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137572955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAACTGC TTTTGGCGTC
  CCCCCCCCCC CCAATTGACA GTTAACTAAT GTGAAAGGGC CTGTATCCTA AGGTGGGACA
  CAAGTACAGA GACCCTCAGG GTACAACGAA AGTACCTCCA CCGAATGAAC TTCGGATATA
  ATTTGCTTTT AGTGACCAGA CACAGGTGTG AAATGCTAGT CACATCTTGA TTCATGCCAA
  K
  CATGTTCCAT TATTATACAT TGACCCCTTT CCCCTCCCTG AGCCTTAAGA CATGTATCCT
  AATTCCTGGA GCAAATCAAA CAGAATAGGA GGTGCTTAAG CAGCCTATGT GGATGAAAGA
  ACTTCCTGCC TTACAGCTGC TTTAACCCAA AGAGCTGCAT TGTACCTGCC AGGTGGCAGG
  TGGGTCAGAT GTGCCGCTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894938	MGP_WTSI_3_137530158	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231727560					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894938	MGP_WTSI_3_137530158	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137572955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	1366 bp distal
Cpgi13867	CpG island 13867	157 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	mRNA-UTR
H2az1	H2A.Z variant histone 1	272 bp downstream
Rr398061	regulatory region 398061	1189 bp downstream
Rr586003	regulatory region 586003	1959 bp distal
Rr586004	regulatory region 586004	1422 bp distal
Rr586005	regulatory region 586005	824 bp distal
Rr586006	regulatory region 586006	within coordinates
Rr586007	regulatory region 586007	561 bp proximal
Tssr31916	transcription start site region 31916	1323 bp downstream
Tssr31917	transcription start site region 31917	1256 bp downstream
Tssr31918	transcription start site region 31918	564 bp upstream
Tssr31919	transcription start site region 31919	613 bp upstream
Tssr31920	transcription start site region 31920	665 bp upstream
Tssr31921	transcription start site region 31921	684 bp upstream
Tssr31922	transcription start site region 31922	764 bp upstream
Tssr31923	transcription start site region 31923	868 bp upstream
Tssr31924	transcription start site region 31924	883 bp upstream
Tssr31925	transcription start site region 31925	927 bp upstream