rs231716790 SNP Detail

Summary

• ID
  rs231716790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATGAGA AGCTAGACAG
  TATTCTGAAC AGCACAGCTG CACCTGTGTC TCAAACAACA ACAAAAAGTC ACAAGTGAAA
  CTTTCAGATC TACTTTTTTA GGTTGTTTTT TTTTTTTTTT TTTTGAGACA GGATCTTACA
  CTGTACCTAG CTGAAACTGG CACGGGATTG ACTGTGTAGC CCAGACTGGT CTCAAGCCAC
  R
  TCAGTCCTCC TGCCTCAGCT TCCATTGGGG GTTCTTGCTA TAAGCTAAAT GTGGACCCCA
  TCAGACTTTT ACAGCTTGTG GTCTATCTCA GTCAAGGATG AAGCTCTGGT TTGCATGGTA
  TTAGTGTAGC CATGTTGGAT CCTGCAAGGG TCATCCCATC ATGAAAGGAC AGACAATGAG
  TGGTTTTGTA CACTGAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321100051	CHEV_4_44086961	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231716790					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1022 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1322 bp distal
Rr591150	regulatory region 591150	825 bp distal
Rr591151	regulatory region 591151	1092 bp distal
Rr591152	regulatory region 591152	within coordinates
Tssr41482	transcription start site region 41482	1532 bp upstream
Tssr41483	transcription start site region 41483	1396 bp upstream
Tssr41484	transcription start site region 41484	1358 bp upstream
Tssr41485	transcription start site region 41485	1068 bp upstream