rs231680610 SNP Detail

Summary

• ID
  rs231680610
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129189835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTAGAA CGGCCCAGCA
  CAGGAGCTCA TACCATGCTC TGCCAGGCAC ACTGACCTTG GAACCACTGA TCCAGCCTCC
  ACCTTGAAGC TGTGCGGACT CTGGGATGGA ATCTCTTTCT CGGCGTTTTC CATTTTTGCA
  CATGTCACCA TATCCCTGTA TTCCTGTTAT TTCTGATTAA GTGTGAGCCA GTTCTAACCC
  Y
  GTTTTAGAAC AGAGTAGGAT ATAAATACGG AGTGGATAAA CATTTGCGTG TGCCGCGGCA
  GGCTGGGTGG ACAGGAGGCA GCAGCTATCT TTACTTGTCT CCTGGTCTGC CACGGAGCTT
  AGGGGACACA GCAGGCCAAT GTCAGATGTT GCTAGGCACA CTGAGGAAAC TTTGCTGTGG
  GACCTTTTAC AGCCACCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321311715	CHEV_4_128973286	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231680610					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129189835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	1883 bp distal
Rr600195	regulatory region 600195	430 bp distal
Rr600196	regulatory region 600196	within coordinates
Rr600197	regulatory region 600197	1834 bp proximal
Sync	syncoilin	Intron