rs231610727 SNP Detail

Summary

• ID
  rs231610727
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34703856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCGCAGT GCCGCGGATG
  AGCGCAGAAA CAATGGCACA CCACCTCCGG CTCTGCCAGC TTCCTGAAAT ACTAGTTGGA
  CAGTCGCCCT GAACCACCCA TGGGCCTTGC CCCACCCTGG CCCCAGCTTC CCGCGCCCCA
  TCCACCCTTA TGTATCCAAG AGAGAGCCAA TATTCCGTAG CATGGGGGAA AGGAGCTGTC
  K
  TCTTGGTGCT GTTTACCCAC TTCCTTCGAA CAGGCGTGCG CCGTGACCTG TTGCTGAAAA
  CGGGGGGCGG GGGGGGGGGA TACAAAGGTT CCCCAGCGGC CGGCTGCGGG CCCGCCTCCC
  CCGCGCGGTT CGGGGCACAG CGCTCTGCTG GGCTCGGCTC GGCGGCGCGG CAGGCCCCGC
  CCCCTTTCAT GCAAAACCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357517494	MGP_WTSI_3_34548629	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231610727					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357517494	MGP_WTSI_3_34548629	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34703856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13072	CpG island 13072	within coordinates
Gm64654	predicted gene, 64654	292 bp downstream
Gm64662	predicted gene, 64662	within coordinates
Gm64674	predicted gene, 64674	286 bp upstream
Rr370604	regulatory region 370604	within coordinates
Rr575166	regulatory region 575166	within coordinates
Rr575167	regulatory region 575167	1803 bp distal
Rr575168	regulatory region 575168	148 bp proximal
Sox2	SRY (sex determining region Y)-box 2	698 bp upstream
Sox2ot	SOX2 overlapping transcript (non-protein coding)	within coordinates
Tssr28821	transcription start site region 28821	216 bp upstream
Tssr28822	transcription start site region 28822	280 bp upstream
Tssr28823	transcription start site region 28823	317 bp upstream
Tssr28824	transcription start site region 28824	467 bp upstream
Tssr28825	transcription start site region 28825	515 bp upstream
Tssr28826	transcription start site region 28826	1059 bp upstream
Tssr28827	transcription start site region 28827	1364 bp upstream
Tssr32975	transcription start site region 32975	1218 bp upstream
Tssr32976	transcription start site region 32976	744 bp upstream
Tssr32977	transcription start site region 32977	17 bp downstream
Tssr32978	transcription start site region 32978	49 bp downstream
Tssr32979	transcription start site region 32979	140 bp downstream
Tssr32980	transcription start site region 32980	1007 bp downstream
Tssr32981	transcription start site region 32981	1329 bp downstream