rs231491444 SNP Detail

Summary

• ID
  rs231491444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75773563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGATCG GCTGATCAGC
  GCTTTGTGCT GTGGTTCCCT CCACAGGTCT GAGCTCCCTG CCCTGAAGAG GCTGTGGGCC
  TGCTCATCGC CTAACCCCTC ACCGACAGCT TGATGGAAAG GAGAGGTTCC ATGTGACTGG
  GAGTAAGGAA GGATCGTTCT CACCCCGCAG ACTAACAGGA GACATAATTA TTCAATTAAA
  R
  AGTTTACTTT AGACCACAGC CTGCTGTGTG CCCATTTACT GCCCTGTTGG CTGGCGGGGG
  GGGGGGGGGG GGGGCAGGAT CAGGGGAGAT AGGGGAACAG CTATCTTGTT AATGTGCTAT
  GCCTCATCTT TGCGGAGGTG GGAGAGAGGA TGTGGGAGTT GGGGATCTTG TTATAGAACC
  CTGAGCTGTC CTTGAACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934140	MGP_WTSI_10_75400474	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231491444					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934140	MGP_WTSI_10_75400474	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75773563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10			mRNA-UTR
Cpgi1737	CpG island 1737			1289 bp distal
Gm867	predicted gene 867			mRNA-UTR
				Noncoding-Transcript-Variant
Rr384937	regulatory region 384937			within coordinates
Rr401998	regulatory region 401998			1684 bp downstream
Rr434185	regulatory region 434185			within coordinates
Tssr94149	transcription start site region 94149			1857 bp downstream
Tssr94150	transcription start site region 94150			1821 bp downstream
Tssr94151	transcription start site region 94151			1470 bp downstream
Tssr94152	transcription start site region 94152			1437 bp downstream
Tssr94153	transcription start site region 94153			1407 bp downstream
Tssr94154	transcription start site region 94154			1396 bp downstream
Tssr94155	transcription start site region 94155			1312 bp downstream
Tssr94156	transcription start site region 94156			555 bp downstream
Tssr94157	transcription start site region 94157			534 bp downstream
Tssr94158	transcription start site region 94158			396 bp downstream
Tssr98154	transcription start site region 98154			659 bp downstream