rs231489518 SNP Detail

Summary

• ID
  rs231489518
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141448936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATTACT CCCCATCAGC
  TGGCAATTAT AACTTGGGTC ATCAAAACAC CCTACACACA CACACACACA CACACACACA
  CAAAAATTGA AAAAAATTTT TAAAAAAAAC TTCAAAACTG AAAACTGAAC TTGGGCATGA
  TAGTGTATTC TTGTAATCCC AGCTGTACAG GAGCCTGAAG CAGGAGGGCT GCTGTCTGAG
  G
  CTAGCCTTGA CCCCACAGTT GAGACCTTGT CTCAAAAACA ACAACAACAA CAAAAAACCC
  AACAACAACA ACAAAAAAAA CCAAAGCAAA CAAACAAAAA CCAAAAGCAG CTGGTTGTGA
  TGGCTCAGGC CTTAACTCCA AACATTTGGG AGGCAAAGTC AACAGGGATC TCTGAGTGTA
  GATGGGAGCC AGTGTTTTAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321389276	CHEV_4_141277540	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231489518					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141448936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15241	CpG island 15241	1107 bp proximal
Ddi2	DNA-damage inducible protein 2	Intron
Rr603862	regulatory region 603862	1510 bp distal
Rr603863	regulatory region 603863	220 bp distal
Rr603864	regulatory region 603864	296 bp proximal
Rr603865	regulatory region 603865	1784 bp proximal
Tssr1364	transcription start site region 1364	1814 bp downstream
Tssr44360	transcription start site region 44360	1672 bp downstream
Tssr44361	transcription start site region 44361	1776 bp downstream
Tssr44362	transcription start site region 44362	1833 bp downstream