rs231484895 SNP Detail

Summary

• ID
  rs231484895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94262176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTCCAC TTGCCAAGGC
  TGGAGGAATA CAATCACTCC CACCCCCACC CCCACCCCCT CCTCCACCCC CACCCCCACC
  CCACCCCACC TCACACACAG AGTTGTTAGA AATAATACAT AGGCACTGGA AACTTGCAAA
  GTAAATAATT TATGGTGGCA TATAAAATTT CACAGTCTGA TAACTGGGGG GGGGGGGGGT
  R
  TCAGAGTCCT TAGTGGTTGG GGTTGTAATC CCCTCTCTAG AACATAAGCA TACATTTAAG
  CTCTTCAAGC CCTGTTTCTA GAGAGCTATT CTAAGTTAAT AAGAATGAGG GCCTGGCGTT
  TTACATCTGT AATCCTGGTA CTTGTGAGGC TGAGGCATGG GGACCAAGAA TTCAAGGCAA
  AGTCTAGGAG AGGATGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321866902	CHEV_6_94235189	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231484895					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94262176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17759	CpG island 17759	370 bp distal
Gm31661	predicted gene, 31661	within coordinates
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	1278 bp upstream
Rr634856	regulatory region 634856	1383 bp distal
Rr634857	regulatory region 634857	1165 bp distal
Rr634858	regulatory region 634858	618 bp distal
Rr634859	regulatory region 634859	153 bp distal
Rr634860	regulatory region 634860	1459 bp proximal
Tssr62172	transcription start site region 62172	1654 bp upstream
Tssr62173	transcription start site region 62173	1593 bp upstream
Tssr62174	transcription start site region 62174	1404 bp upstream
Tssr62175	transcription start site region 62175	1375 bp upstream
Tssr62176	transcription start site region 62176	1349 bp upstream
Tssr62177	transcription start site region 62177	1259 bp upstream