rs231480458 SNP Detail

Summary

• ID
  rs231480458
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135750060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG AGCCAGGCAG TGGTGATGCA
  C
  GCCTTTAATC CCAGCACTTG GGAGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321353741	CHEV_4_135578664	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231480458					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135750060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15090	CpG island 15090	635 bp distal
Eloa	elongin A	1100 bp upstream
Gm68304	predicted gene, 68304	within coordinates
Rr398604	regulatory region 398604	777 bp downstream
Rr602239	regulatory region 602239	997 bp distal
Rr602240	regulatory region 602240	738 bp distal
Rr602241	regulatory region 602241	548 bp distal
Tssr44023	transcription start site region 44023	1084 bp upstream
Tssr44024	transcription start site region 44024	1055 bp upstream
Tssr44025	transcription start site region 44025	1013 bp upstream