rs231439082 SNP Detail

Summary

• ID
  rs231439082
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15186996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGCTAT GAGGGGAGAC
  GGGCTTGTTT ATGATGCAAG CCAGTATAAA CACAGCCAGA GGCTCACACG GTTTCCTGCA
  CTTTTCCCAC TGACATGAGC AAGTTCTCCC TGCAAACACC AACAGCTTTT TCCTCCGACC
  AGTTTGACAT TCCTCATCTT CAGGTAATAA ACCCTAAATT CTACCCGTGT ATTTTCACTT
  K
  GCGGGAGCTT AAGTGACAGG GTTTTGTTTG GTCCTTTCTG TGACCATAAA AAAAAAGCAG
  CCGTCTCCAT AATGATGTGT GTTTAGAGCT GGGGTTGAAT CGCTTTCACT GTCACCAGGC
  TGTGTAATAG AAAACTTTCG TTCTTGCTTC TCAGTCATCG TTTACCTTTG AACTGTTCTG
  ACTTTAAATT TTATTATCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367474016	MGP_WTSI_6_15136997	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231439082					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367474016	MGP_WTSI_6_15136997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15186996 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr406279	regulatory region 406279			326 bp proximal
Rr626648	regulatory region 626648			1481 bp distal
Rr626649	regulatory region 626649			590 bp distal
Rr626650	regulatory region 626650			within coordinates
Rr626651	regulatory region 626651			943 bp proximal
Tssr54978	transcription start site region 54978			1753 bp downstream
Tssr54979	transcription start site region 54979			1604 bp downstream
Tssr54980	transcription start site region 54980			1545 bp downstream
Tssr54981	transcription start site region 54981			1477 bp downstream
Tssr54982	transcription start site region 54982			1402 bp downstream
Tssr54983	transcription start site region 54983			1371 bp downstream
Tssr54984	transcription start site region 54984			1342 bp downstream
Tssr54985	transcription start site region 54985			1332 bp downstream
Tssr54986	transcription start site region 54986			1138 bp downstream
Tssr54987	transcription start site region 54987			153 bp downstream
Tssr54988	transcription start site region 54988			101 bp downstream
Tssr54989	transcription start site region 54989			84 bp downstream