rs231435006 SNP Detail

Summary

• ID
  rs231435006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152423278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAATCCG GGCATGTGTG
  CCGCCCCCCC GCCGTGCCGC CGTGCCGCGG GCGCTGCCGC CGCCACCCTC GGCCGGCTGC
  GGGACTCGCG CTGCGGGGCG CGGTGGGCGG AGCGGCCCGG GCTTGGCGGG TGCGGGCAGA
  GGCGGCCTAG AGCTTGCGGG GTCGAAACGG GGGGGTGGAG GTTTGGGGGG CTGGGGGGGC
  Y
  GGCGGCCGCC ATCTTCTTGC CGAGACCGCC TCGCCCGCCG CGCGGGTCCG TCCGGCAGCG
  CACGGGTTAA GGCTGGCACC GCGCCCGGCG GGAGGGGGGC GCCCACCTTC CTTCCCCCCC
  CGCGCCGGGC ATGCGGGGCC CGCTGGGCAC CGAGGAGGAG CTGCCGCGGC TGTTCGCGGA
  GGAGATGGAG AACGAGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss363710644	MGP_WTSI_4_151712930	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs231435006					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363710644	MGP_WTSI_4_151712930	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152423278 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	mRNA-UTR
Cpgi15412	CpG island 15412	within coordinates
Rr605852	regulatory region 605852	within coordinates
Rr605853	regulatory region 605853	77 bp proximal
Tssr40549	transcription start site region 40549	112 bp downstream
Tssr40550	transcription start site region 40550	59 bp downstream
Tssr40551	transcription start site region 40551	within coordinates
Tssr40552	transcription start site region 40552	93 bp upstream
Tssr40553	transcription start site region 40553	153 bp upstream