rs231377897 SNP Detail

Summary

• ID
  rs231377897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130004330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGCAAAAG TTGAGTGCCG TTTGGTTCAG
  TGAGGGAGCC TCCTTGATGG AACTCAGTGC TTAAGAGCTT GGTCTCTGGT TGGCACATCC
  CTACTCTGCC AACTTGCTTA CAGAAATTGG TTGTGAAGAC CTGAAGTTTG GTTTCCTGTT
  Y
  TGTAGAATAG GGTCATAGCA GTGCCTACAC CAGACTTCAC TGTGACATGA GATAGAGTCA
  AGTGTGGCAT GTAGTAAGTA CTCCGCCTGG GAGAGGAGTG CAGAGATGGA GACTCTAAGT
  GTTAAGTGGG AGTGGGTTTA AGGTGTTAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321317102	CHEV_4_129787781	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231377897					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130004330 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	within coordinates
Pef1	penta-EF hand domain containing 1	Intron
Rr600446	regulatory region 600446	1088 bp distal
Rr600447	regulatory region 600447	99 bp distal
Rr600448	regulatory region 600448	1799 bp proximal