rs231307608 SNP Detail

Summary

• ID
  rs231307608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54505037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAGGAA TTTGTTTGTT
  TGCAGTCAAG GTCTGACTCA TGTGGCCCAG ATGGCCTCAA GATCTTTCTG TGGCCAAGGA
  TGACAGTGAA CCCCTGATGC TGGTCTCAGA CGGCCACAGC ACCCTGTGCA CCCTATTTCC
  CTTTGGTGCT GGAGATTGAG TCTGGGGCCT TGTGCTTGCT AAGCAGGCAC ACCCCCTAAC
  Y
  GACCTACATC TCCAGCCCCT CTCTAGGAAT TCTGGAATGT GTTCAAATGT CAAAGGCTAG
  GAGTTGATCT TCCATGGTTA CTTCAACCTT AATCCGTACC GTTTTTAAAC AGTGATTTCA
  GATAAAGATG GAGATCTTAG CACAGGCTGA TGTTTCTCCA GGAGCAGCCT AGGGCACGGC
  ACATGTCCTG CAGATGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772137	CHEV_3_54401538	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231307608					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54505037 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576818	regulatory region 576818	276 bp proximal