rs231281364 SNP Detail

Summary

• ID
  rs231281364
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53154604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATGTTTCA AAAATCCGTA GATACCAAGG
  TCAGACACGA TGTCCAGATG ACCTAGTTTG ATGATGAAAG ATGGTGGTGG TTTATTTATA
  GCCCCACCCC CAACTTATAC TTATTTGCTT TGAGCATGTG AAATTACTTT AAAGAATGAA
  K
  GCATTCATTC TTTAAAgggc tgacaagaag tgtcagtgga taagaacacc taaggttctt
  tcacagggcc caggttcagt cctcagctcg gagttctatg agatccaatg cccccttctg
  gcctctgttg gcattgcatg tggtgcacat                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320767199	CHEV_3_53051105	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231281364					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53154604 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lhfpl6	LHFPL tetraspan subfamily member 6			Intron
				Noncoding-Transcript-Variant
Rr576667	regulatory region 576667			1395 bp distal
Rr576668	regulatory region 576668			1 bp proximal
Rr576669	regulatory region 576669			105 bp proximal