rs231230377 SNP Detail

Summary

• ID
  rs231230377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43960816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTATGTAG CCTTGGCTGT
  GTAGGTAGGA TAGGCTAGTC TCAACAAACT CATAGAGATC CACCTGCCTC AGCCTCCTGG
  GTGCTGATGT TAAAGGCATG TGCTAGCATA TCGTTTATCG TTGGAATTTC TGTCCTAACT
  CGAGCCAAAA TCCATTCACT GATTTGTTTG TTTATGTTGC TGGGAATTGA ACACGGAAGT
  R
  TTCTACCATT GACCTACATC CGAGACTTTT GATTGTTCTC GACTGAGTAA CTCAACAGCA
  ATTTTTAAAA TCAAGCATTC TAGGGCCCAC AGGATGGGTC AGTGGGTAAA GGCGCTTGCC
  GCCAAGCCTG AGGACTTGAA TTGACCTGCA TGACAGACGG AGAGAGTCAA CTCTCACAAG
  TTGTCCTCTG GTCTCTGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321099587	CHEV_4_43973688	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231230377					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43960816 () rs orientation: forward

Symbol	Name	Function Class
Glipr2	GLI pathogenesis-related 2	Intron
Gm30377	predicted gene, 30377	within coordinates
Rr398233	regulatory region 398233	985 bp downstream
Rr591114	regulatory region 591114	1991 bp distal
Rr591115	regulatory region 591115	1019 bp distal
Rr591116	regulatory region 591116	518 bp distal