rs231204513 SNP Detail

Summary

• ID
  rs231204513
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152122388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCCTTCC AAAGGTCCTG
  AGTTCAATTC CCAGCAACCA CATGGTGGCT CACAGCCATC TGTAATGGGA TCTGATGCCC
  TCTTCTGGGG TGTCAGTGAC AGCGTACCCA TAAATAACTA AACAGGAATG GAAGGACTCA
  TTTAGCTCTC AGGGTGACTT CAGTCTTTAG AGATGGCTGG GGACTGGCTA GCTCAGAGGC
  S
  AGCAGAGCAG CCCTTCTTTG TGCTCCTCTA AGAGAAAGTG TGTCTCTGAC AGGATTTCTA
  GCCGCCTCAG CTGGTTTTGA ACTCACTTGT AATCCTCTTG TCTCCATCCT CCAGTACAGA
  GATTATAGGT AGTGCGTGCC TTAGCCACCA ATCCAGCTAT GTGGTGCCTG AGCCTAAACT
  CAGAGCCTCA CATACCCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363703537	MGP_WTSI_4_151412040	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231204513					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363703537	MGP_WTSI_4_151412040	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152122388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15385	CpG island 15385	1192 bp proximal
Nol9	nucleolar protein 9	1390 bp upstream
Rr605720	regulatory region 605720	1499 bp distal
Rr605721	regulatory region 605721	1221 bp distal
Rr605722	regulatory region 605722	108 bp distal
Rr605723	regulatory region 605723	627 bp proximal
Rr605724	regulatory region 605724	1324 bp proximal
Tas1r1	taste receptor, type 1, member 1	Intron
Tssr40490	transcription start site region 40490	1384 bp upstream
Tssr40491	transcription start site region 40491	1427 bp upstream
Tssr44804	transcription start site region 44804	503 bp downstream