rs231202954 SNP Detail

Summary

• ID
  rs231202954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:87130186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGCCCCTA GGAAGCCCCT AGAGCTTTGA
  ACTAATTATG CATTAAAAGT ATAATCACGT GGTTAAGCTG TTCTCCATCC TCAGACTGTG
  CTCATTGATC AGGTTGGTGG AGTTACAACA TTAGCTCATG CTAGACAATG CCACAGTAGC
  Y
  CTCTTCTTAG ACTATATAGG TGTATATAGC AATTAGCTTC AATGCCTTGT TCAAGAAAGA
  TGCAAATGTT ACTAGGGCAT GGAATGGGAA GGGCTacaca cacacacaca cacacacaca
  cacacacaca cacacacaca caGGTCTGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321200597	CHEV_4_86857853	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231202954					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87130186 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr594869	regulatory region 594869			991 bp distal
Rr594870	regulatory region 594870			175 bp distal
Slc24a2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2			Intron
				Noncoding-Transcript-Variant