rs231159503 SNP Detail

Summary

• ID
  rs231159503
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129079608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTACAC AATAGCATTT
  CAAGGAATAT AGTATCCTGG GCTCTAGAAT GCCTGTGGGG TTTCTAGAAG ACTGATCTAC
  CTTCCTTCCT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC CTTTCCTTTC CTTCTTTTCA
  TCTTATAAGC AGACAAAAAA ACAAGACAAA ACAAAACAAA ACAACACCCC CCCCCCACAC
  M
  CACTGTACCT TTTCTATAGT AACATCACAA AAATAAGAAA ATGTTCACTG GAGTGATAGC
  TTGTGGTTGT GACCCTAGAA ATAGAGACAA CAGTAGGAAG ATTGTCACAC ATTATGGGCT
  AATGTGAAAC CCTGTCTCAA AAACAAAAAC AAAAACAAAA AACCCTCAAT AAAAATTAAG
  ATGTACACCA ATTCTCTAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	JF1/MsJ	LG/J	MA/MyJ	QSi5/Ianm	RF/J	ST/bJ	WSB/EiJ
ss355635131	MGP_WTSI_2_129063424	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	JF1/MsJ	LG/J	MA/MyJ	QSi5/Ianm	RF/J	ST/bJ	WSB/EiJ
rs231159503					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355635131	MGP_WTSI_2_129063424	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129079608 () rs orientation: forward

Symbol	Name	Function Class
Rr564886	regulatory region 564886	1469 bp proximal